Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005179637 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 24533768 |
Total Bases | 196.2 Mbp |
Sequences flagged as poor quality | 0 |
Sequence length | 8 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGAGTCGC | 8726566 | 35.56961164709799 | No Hit |
TATCGATA | 5851998 | 23.852830107466573 | No Hit |
GTGTCGCT | 4917680 | 20.044536167457032 | No Hit |
CCCAATAG | 3757859 | 15.31708867549412 | No Hit |
AGCGTCGC | 122803 | 0.5005468381375417 | No Hit |
AGAGTCGA | 67476 | 0.27503317060795557 | No Hit |
AGAGTCTC | 65131 | 0.2654749160422484 | No Hit |
AGAGTAGC | 55275 | 0.22530171476309713 | No Hit |
TATCTATA | 42785 | 0.17439229065832856 | No Hit |
TATCGAAA | 38440 | 0.15668200661227413 | No Hit |
GTGTCGCG | 37826 | 0.15417933356180755 | No Hit |
CCAAATAG | 37670 | 0.15354347526234047 | No Hit |
CCCAATAT | 35187 | 0.14342273066248934 | No Hit |
TATAGATA | 32937 | 0.1342516974970987 | No Hit |
ATAGTCGC | 30293 | 0.12347471452407961 | No Hit |
GTGTCGCA | 27830 | 0.11343549021903199 | No Hit |
AGAGACGC | 26941 | 0.10981191311501763 | No Hit |
GGGTCGCT | 26330 | 0.10732146810877156 | No Hit |
AGATTCGC | 25868 | 0.10543834929881134 | No Hit |
GTGTCGAT | 25548 | 0.10413402458195578 | No Hit |
Adapter Content
Can't analyse adapters as read length is too short (12 vs 0)