FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109559755
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCGCTC2974014527.145136460007603No Hit
GTTGAGAA2887494726.355432247908915No Hit
TCGATACT2563674123.39977941717741No Hit
AGATCTGG2302827121.018914290197163No Hit
AGATCTGA3357080.30641543512031405Illumina PCR Primer Index 9 (100% over 8bp)
CACCGCTA3301550.3013469681453742No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)