FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32019999
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG1082179433.79698419103636No Hit
GAAGGAAC947450829.58934508398954No Hit
TTTCATGA938087029.29690909734257No Hit
ACGTCCCT18290935.7123455875186No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)