FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42361514
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTAAC1178991427.831663429215492No Hit
CGGTCCCA1099308825.950649450347786No Hit
ACAGAGGT1022196124.130301386300783No Hit
TATAGTTG821682419.396908240815No Hit
ACAGCGGT1934180.456588968940062No Hit
CGGTCCCC718910.16970828757442427No Hit
GTCCTACC636070.15015280143197904No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)