FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42033246
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTAAC1166215227.745066369606576No Hit
CGGTCCCA1088494025.89602525581774No Hit
ACAGAGGT1012930524.098317317677537No Hit
TATAGTTG819020819.485071412281602No Hit
ACAGCGGT1850320.44020392810015196No Hit
CGGTCCCC760600.1809520016607806No Hit
GTCCTACC668290.15899081408083496No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)