FastQCFastQC Report
Wed 10 Jul 2024
EGAF00005179648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33635015
Total Bases269 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTGGC965954128.718705789190224No Hit
TACCACCA834858824.8211216792976No Hit
GGGTCAAG787140223.40240371529491No Hit
CTAAGTTT686569820.41235301961364No Hit
TCCCACCA1284940.3820245063068948No Hit
TACCCCCA1204890.358224903422817No Hit
ACGGTGGC559840.16644559248747176No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)