FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109356001
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCGCTC2963277127.09752617965611No Hit
GTTGAGAA2883559626.36855383912585No Hit
TCGATACT2563839723.444892612706276No Hit
AGATCTGG2302197521.05231975335309No Hit
AGATCTGA3357830.30705493702170034Illumina PCR Primer Index 9 (100% over 8bp)
CACCGCTA3298050.30158838745392674No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)