FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38657546
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT1166829830.18375248133961No Hit
CCAGGGCA1098142728.40694285146812No Hit
AATAATGG807468920.88774336581013No Hit
GTGTCATC638400716.514258302893825No Hit
GTGTCATA1205000.31171145731806155No Hit
CCAGGGAA777090.20101896793966179No Hit
AATAATGA743490.19232726257378055No Hit
CCAGGGCC694020.17953027851276435No Hit
TGCCTAAT665010.17202592218347226No Hit
TGACTCAT644650.16675916262247997No Hit
CCCGGGCA584480.1511942842931623No Hit
TGCCTCAA476750.12332650396380566No Hit
TGCCTCAG416860.10783405651253704No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)