FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40835670
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT1244238830.46941068923321No Hit
CCAGGGCA1171599228.690583502119594No Hit
AATAATGG858931621.03385594016212No Hit
GTGTCATC684030816.75081613697045No Hit
GTGTCATA1051830.2575762807369146No Hit
AATAATGA790480.1935758614955993No Hit
CCAGGGAA606390.14849517590870923No Hit
TGACTCAT509570.12478551227395068No Hit
TGCCTAAT500820.12264277774798357No Hit
TGCCTCAA462920.11336167620122309No Hit
CCAGGGCC430410.10540049912245839No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)