FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30473107
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTATTA330400.018.4478031
TATTACA305700.018.410313
CTATTAC311250.018.3712462
GGGCACT228900.018.333261
CTTTGCG183700.018.3298321
GACTGCG209100.018.3039341
ATTACAC245750.018.2625944
GGGAGTT175950.018.1359962
ACCCTAT242300.018.092849
AGCATCG165750.018.0816386
TTACACC243700.018.059225
CCGATAG133600.018.0465073
GGCCCGT148350.018.0379899
TCGTAGG174950.017.9303788
TGTACCG162250.017.8915087
CGACTTC164850.017.8831771
ACCCGAG124600.017.8647410
TACGGGC145200.017.864441
GACTACT115050.017.86137210
CTCTACG152150.017.8176671
Produced by FastQC (version 0.11.5)