FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29116950
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGCACT216250.018.4718481
CCTATTA323350.018.456171
GACTGCG195700.018.4490831
CTTTGCG167250.018.3881231
TATTACA296700.018.3832553
GGCCCGT147550.018.379629
CTATTAC304100.018.3010432
ATTACAC242200.018.209014
ACCCTAT233750.018.2026259
CCGATAG124650.018.0836663
AGCATCG167300.018.0762236
GGGAGTT167300.018.0644842
TTACACC238350.018.0416035
CCGTGGA98800.017.9983711
CGACTTC159700.017.9235121
GCCCGTT151150.017.90229410
ACCCGAG116350.017.89383310
CGCTGGA123000.017.8804531
ATCGAGT115500.017.8119181
TCGTAGG166450.017.8063958
Produced by FastQC (version 0.11.5)