FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27092793
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG907317133.48924195449321No Hit
TACTCTTC688793525.42349546611898No Hit
GGACACGT638563923.569511640974042No Hit
ATGAGAAA439786516.232601046337304No Hit
GGCCACGT329170.12149725574620528TruSeq Adapter, Index 20 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)