FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37927302
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCGAT156000.017.833031
TTGACTT200050.017.6866361
TGACAAC164800.017.3421021
TGACGGC117650.017.200961
ATCGAGT119400.017.2001951
CACCGAA103950.016.9097638
AGCTTGA138900.016.9028361
AGCTACC106600.016.8552068
TGTTCCG137000.016.8524861
TTTATGC142750.016.8183671
TGGCTGG135350.016.7770771
CTGATAG112550.016.744961
GACTAAC101400.016.7315671
GGGACCT96750.016.7189041
GGGCATC150350.016.6934431
GACCTGG129450.016.6376021
CCTTACG129250.016.6323871
GCGCGAT76050.016.560571
ACGAGCC122350.016.4993171
ACTGATG91000.016.478171
Produced by FastQC (version 0.11.5)