FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29637829
Sequences flagged as poor quality0
Sequence length26
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTACGA189850.018.9198177
AAATGCC306600.018.877961
GTGCAGC295800.018.8232151
TTTAAGA137350.018.7837184
AGAGCGA194150.018.7702711
ATCGAGT177600.018.7676891
AGAAGAA108000.018.666298
TAAGAGT192750.018.6558846
GACTACA218850.018.6492961
AGAGCTT194900.018.574861
CGACCTT361650.018.5297811
AGATGCA180850.018.5179233
AATGCCA219700.018.5155962
AGTCTTT211800.018.5049231
AGACCTA172450.018.5035428
TTAAGAG139750.018.4969125
ATGCCAG219550.018.4830763
AAGAATA66800.018.4726817
CTTAGGA141650.018.4531961
ACTGAAC130800.018.4390371
Produced by FastQC (version 0.11.5)