FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30893906
Sequences flagged as poor quality0
Sequence length26
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTACGA191950.018.9157477
AAATGCC316900.018.8584291
ATCGAGT189450.018.8405151
AGAAGAA111300.018.8043988
GTGCAGC305650.018.7964971
AGAGCGA215650.018.6854041
TAAGAGT198750.018.6207566
AGAGCTT207950.018.6172081
CGACCTT372650.018.6142371
TTTAAGA142650.018.6113594
GACTACA228100.018.5865231
TATGAAA90700.018.555089
CCAGAGA117050.018.4786594
AGATGCA199400.018.4748023
TCAGATG217450.018.4709241
GATGCAT197900.018.453144
TTAAGTA135100.018.4524069
AAGAAGC113450.018.42158910
CTTAGGA152250.018.410831
ACTGAAC135450.018.404821
Produced by FastQC (version 0.11.5)