FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127986925
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCGC3431127626.808422813502236No Hit
CATGAACA3348260326.160955894518136No Hit
AGCTGGAT2944123823.003316940382778No Hit
GTGACTTG2901691522.671780730726987No Hit
TCACTCGA1732260.13534663794758722RNA PCR Primer, Index 47 (100% over 8bp)
GTGACTTA1405860.10984403289632906No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)