FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128129601
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCGC3425126726.73173625195321No Hit
CATGAACA3354767526.18261099556534No Hit
AGCTGGAT2951349223.034093425452873No Hit
GTGACTTG2903593522.661379395070462No Hit
TCACTCGA1715150.13386055888833995RNA PCR Primer, Index 47 (100% over 8bp)
GTGACTTA1405510.10969440231067293No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)