FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126528338
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCGC3383840426.743735462643947No Hit
CATGAACA3307710126.14204969640872No Hit
AGCTGGAT2900218222.92149131050785No Hit
GTGACTTG2860996822.611510158301453No Hit
TCACTCGA1731430.13684128214819355RNA PCR Primer, Index 47 (100% over 8bp)
GTGACTTA1390780.10991845953117632No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)