FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46596988
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAATGGA259750.018.6148
GCGCGAT178300.018.6023271
TGACGGC161900.018.4540841
ACGAGGA184450.018.302031
CTGCGGA169600.018.2590941
GGGAATG152200.018.1843851
TGCTACC246750.018.1563281
CCGGTAG220800.018.0296841
TGCGGGT160250.018.0011961
GGGAGAT146600.017.9238071
GGGATGA119600.017.7801821
GCGGGTG90250.017.7497462
AGGACGA77200.017.7201588
TCGCGAG166300.017.7192211
TGACTAG162400.017.5904241
ATCGAGT171350.017.5881081
GCTGCAG185000.017.5825921
CCACCTA236450.017.5512561
CTGAAAC192950.017.5372451
GAAGCGA75850.017.5349166
Produced by FastQC (version 0.11.5)