FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19916896
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTAAC565171828.376500032936857No Hit
CGGTCCCA486847224.443929415507316No Hit
ACAGAGGT478060824.002776336232312No Hit
TATAGTTG408418620.50613710088158No Hit
CGGTCCCC665530.33415347451731436No Hit
GTCCTACC350050.17575529841597806No Hit
GGCCTAAC235410.11819612855336495No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)