FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28182969
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATTCC813483928.8643790510503No Hit
TTGCCGGA703989924.979266733749732No Hit
AGTTGCAG587837420.857894709389914No Hit
CAAGAATT576466920.454441829744766No Hit
GCCATTCA1691370.6001390414189506No Hit
GCCATTAC752660.2670619976199101No Hit
AAAGAATT546120.19377660316767903No Hit
TTGCCGGC542790.19259503851421758No Hit
GCAATTCC441670.15671521336165825No Hit
GCCCTTCC424090.15047740356951037No Hit
GACATTCC421710.14963292192529468No Hit
TTGCCTGA358580.1272328689003632No Hit
TTGACGGA353170.12531326986876365No Hit
TTGCCGAA352860.12520327436048345No Hit
CAAGAATA346440.12292530286642261No Hit
GCCATACC315600.11198252391364444No Hit
AGTTGAAG287010.10183809945644832No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)