FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29532172
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGCATC155600.017.953961
AGCTTGA159600.017.7546711
GAATGAA127050.017.6742321
ATGCGAT89950.017.402521
GCGCGAT84900.017.4009021
GGCGACT91150.017.392881
CCGAATT130150.017.35564810
GGTATTG152900.017.315911
TGCTACC119000.017.3148671
GGGACCT100650.017.3114431
CCGGGAT86600.017.2556611
GTCGACT86800.017.2224678
GACCATC122500.017.2193743
AGCGCCT116200.017.1504338
ATCGAGT105400.017.100671
ATAGACC71150.017.0945471
AGAAACC107150.017.0685028
TACGGAT105400.017.043731
CTGCCTA113100.017.0242141
CATATAC121200.016.9626778
Produced by FastQC (version 0.11.5)