FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38001958
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCGAT138450.017.7928411
CAATGGA184250.017.7366358
ATCGAGT158650.017.7023471
CGGACTG96450.017.4213141
TGCTACC167850.017.3338971
CGGCTAG184650.017.3276141
CTGCGGA121250.017.2812881
CCGGGAT98600.017.2747421
CGCTATC182300.017.2711751
TGACTAG128450.017.2703551
TACCTTA208600.017.2368721
ATAACGC149450.017.2060031
CATGGCG199150.017.1507951
ATGGCGG147300.017.1483862
AGGCGAC113700.017.141478
CTGCCTA143250.017.1407851
GTAACTG156450.017.0818421
CACCCAT151750.017.0015188
AGGGTGA168850.016.99431
TGGCGGT148700.016.9398173
Produced by FastQC (version 0.11.5)