FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40332865
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAATGGA192750.017.757578
ATGCGAT151800.017.6841891
TGCTACC184100.017.5641171
CGCTATC200300.017.561671
ATCGAGT168250.017.5067141
AGGCGAC122300.017.3823248
ATGGCGG156050.017.3435252
TGGCGGT155500.017.3403113
CATGGCG209400.017.3286611
CGGACTG105750.017.2795541
TGACTAG138750.017.2786351
TACCTTA220200.017.1873231
ATAACGC156700.017.1822641
GTAACTG164650.017.0815771
AGGGTGA180200.017.0395451
CTCGAAA112800.016.9621261
CACCCAT170200.016.9377658
CTGCGGA126800.016.9350781
CCGGGAT103300.016.9341681
GCGCGAT81800.016.8733061
Produced by FastQC (version 0.11.5)