Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005179891 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 16707268 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 55 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCCCAT | 10460 | 0.0 | 10.601685 | 1 |
TCCCCAT | 12575 | 0.0 | 9.272961 | 7 |
TCCCATC | 11990 | 0.0 | 9.128804 | 2 |
GGCCCTA | 2320 | 3.6379788E-12 | 8.066715 | 4 |
CCCATCC | 15300 | 0.0 | 7.950724 | 9 |
ATCCCCA | 15675 | 0.0 | 7.622755 | 6 |
CCCCATC | 15935 | 0.0 | 7.5435505 | 8 |
CCATCCC | 16680 | 0.0 | 7.120316 | 4 |
CTAATAG | 3880 | 0.0 | 6.6420984 | 25-29 |
CGACTAA | 1690 | 7.389428E-5 | 6.3889227 | 3 |
CCTAATA | 4010 | 0.0 | 6.211346 | 25-29 |
CATCCCC | 22805 | 0.0 | 5.9970117 | 5 |
GTAGCTA | 2785 | 8.179268E-8 | 5.946921 | 2 |
TCCTAAT | 5040 | 0.0 | 5.5127945 | 20-24 |
CCCTATT | 5160 | 0.0 | 5.4403434 | 6 |
GATCTAA | 1855 | 0.001662714 | 5.4325933 | 3 |
GAGCTAA | 2435 | 6.2507985E-5 | 5.321041 | 3 |
CCTCACT | 5655 | 0.0 | 5.2950845 | 10-14 |
TGGGGGG | 5315 | 0.0 | 5.1737638 | 105-109 |
ACATACC | 7870 | 0.0 | 5.1218247 | 8 |