FastQCFastQC Report
Thu 9 May 2024
EGAF00005180178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005180178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22673750
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGCAGAATCTCGTAT1534040.6765709245272618TruSeq Adapter, Index 5 (97% over 37bp)
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC657880.2901505044379514No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG302430.13338331771321463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)