FastQCFastQC Report
Fri 10 May 2024
EGAF00005180179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005180179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22673750
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTGTTCGTGTAGATCT1642250.7242957164121506Illumina Single End Sequencing Primer (100% over 32bp)
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG493860.21781134571916866No Hit
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA364130.16059540217211532No Hit
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA236450.1042835878493853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)