EGAF00005180233 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005180233
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13454174
Sequences flagged as poor quality	0
Sequence length	150
%GC	55

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	15530	0.0	10.711724	1
TCGGAAG	16005	0.0	9.987349	3
ATCGGAA	18065	0.0	9.328667	2
AGAGCGT	17625	0.0	9.313336	8
GAGCGTC	20945	0.0	7.8368425	9
AAGAGCG	20870	0.0	7.7608843	7
GGAAGAG	27190	0.0	6.3809657	5
CGGAAGA	27410	0.0	6.1994877	4
GAAGAGC	28970	0.0	6.063113	6
TAGATCT	5975	0.0	5.8571253	40-44
TAGGGAA	6145	0.0	5.552483	15-19
AGAGTGT	6345	0.0	5.3547583	25-29
TCATTAA	6750	0.0	5.353679	65-69
GTAGGGA	6735	0.0	5.2584567	15-19
AGTGTGA	6610	0.0	5.227202	25-29
CTAGATC	945	5.838956E-10	5.027678	140-144
GAGTGTG	7015	0.0	5.007508	25-29