EGAF00005180272 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005180272
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12805269
Sequences flagged as poor quality	0
Sequence length	150
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

$Per base quality graph$

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCACA	14395	0.0	14.45047	9
AGAGCAC	15580	0.0	13.304974	8
GATCGGA	19670	0.0	10.752015	1
TCGGAAG	23135	0.0	9.276159	3
AAGAGCA	24000	0.0	8.997026	7
ATCGGAA	24835	0.0	8.554096	2
GAAGAGC	27740	0.0	7.861857	6
GGAAGAG	29395	0.0	7.3212748	5
AGTGAGT	3705	0.0	7.3081913	1
CGGAAGA	32960	0.0	6.769581	4
GTGAGTA	4035	0.0	6.6035047	2
TAACCCC	3995	5.456968E-12	5.945562	9
AGTCACA	7130	0.0	5.9163065	25-29
GTCACAC	7555	0.0	5.7740526	25-29
CAGTCAC	8040	0.0	5.4973693	25-29
CTCGTAT	7985	0.0	5.174092	40-44
CTCGAAT	8315	0.0	5.1417804	35-39
TCACACG	8185	0.0	5.0651674	30-34
TCTCGTA	8125	0.0	5.049503	40-44