FastQCFastQC Report
Sat 11 May 2024
EGAF00005180475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005180475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14770143
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACAGTGGTGTGTAGATCT852840.5774080860286863Illumina Single End PCR Primer 1 (97% over 35bp)
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG263240.17822440852468388No Hit
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA180780.12239556516142058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)