FastQCFastQC Report
Fri 10 May 2024
EGAF00005180588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005180588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11459399
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCACTAATCTCGTAT184880.1613348134574946TruSeq Adapter, Index 13 (97% over 38bp)
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC119450.10423757825344941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)