EGAF00005180600 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005180600
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18598869
Sequences flagged as poor quality	0
Sequence length	150
%GC	51

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCTAG	1220	0.0	8.852039	45-49
AACACTA	8080	0.0	7.483776	7
ACACTAT	7665	0.0	7.325467	8
AGTGAGT	4075	0.0	7.1448503	1
CCACTCA	5440	0.0	7.0135145	9
CACTATA	7970	0.0	6.9549036	9
CTAAGGG	3680	0.0	6.6539416	2
GTGAGTA	4930	0.0	6.2815876	2
TAAGGGG	4980	0.0	6.2185698	3
CCCTAAG	2590	1.2539022E-7	6.1147084	6
AAACACT	10060	0.0	5.9392686	6
CCCTAGA	1865	0.0	5.790611	45-49
ACCAAAC	10400	0.0	5.6092277	3
CCAAACA	11580	0.0	5.2215176	4
CCTAGAG	2485	0.0	5.098815	50-54
GCCACTC	7815	0.0	5.0662494	8
GGCCCTA	2350	0.0	5.024443	45-49