EGAF00005180766 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005180766
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13781001
Sequences flagged as poor quality	0
Sequence length	150
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC	153091	1.1108844705838132	No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG	86489	0.6275959199190247	No Hit
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA	59957	0.43506999237573524	No Hit
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	38412	0.27873156674177735	No Hit
ATACAAACACTATAGCTCTCAAAATTTAAAGTACTAAATCCTTGAGGCCC	26017	0.18878889857130118	No Hit
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	17896	0.12985994268486012	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGGCATAATCTCGTAT	15347	0.11136346336525192	TruSeq Adapter, Index 20 (97% over 38bp)
GTAGCCCTTATTTAGAATAAGTCAAAAAAAAAGTAAGGGACAAATATTCC	13966	0.10134242062677451	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACTATAG	7090	52.18515	9
AACACTA	7325	50.51186	6
ACACTAT	8045	46.079697	7
CACTATA	8700	43.024174	8
TAGCCCT	5940	38.74456	2
GCCCTTA	6830	33.837345	4
CAAACAC	11380	33.024803	4
GTAGCCC	8315	27.673128	1
AAACACT	14615	25.660631	5
TACAAAC	15520	23.939884	2
TATTTAG	9815	23.762093	9
AGCCCTT	10325	22.98859	3
CCCTTAT	10795	21.3381	5
GATCGGA	14730	19.526653	1
GAGCACA	14865	19.369799	9
AGAGCAC	14690	19.35547	8
ACAAACA	20200	18.679138	3
CCTTATT	15465	15.732751	6
TCGGAAG	21945	13.5117855	3
GAAGAGC	21990	13.061275	6