FastQCFastQC Report
Sat 11 May 2024
EGAF00005180821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005180821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16645747
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG604830.36335407476756676No Hit
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA344360.20687566619869927No Hit
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA277510.16671525765710604No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCACTGTCGTGTAGATCT270550.16253400943796634Illumina Single End Sequencing Primer (100% over 32bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)