FastQCFastQC Report
Sat 11 May 2024
EGAF00005181028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005181028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15011703
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCCGCGCCCCGCCGCGGGCCGCAAAAAGGCGCTTTTTGCCGCAAAA681140.45373932591125743No Hit
CCCGGCCGCGCCCCGCCGCGGGCCGCAAAAAGGCGCTTTTTGCCGCCAAA476090.31714589610519206No Hit
CCCGGCCGCGGCCCGCCGCGGGCCGCAAAAAGGCGCTTTTTGCCGCAAAA271900.18112535266651625No Hit
CCCGGCCGCGCCCCGCCGCGGGCCGCAAAAAGGCGCTTTTCGCCGCCAAA257430.17148620646171855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)