FastQCFastQC Report
Sat 11 May 2024
EGAF00005181029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005181029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15011703
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCCGCGCCCCGCCGCGGGCCGCAAAAAGGCGCTTTTTGCCGCAAAA605910.40362509170345295No Hit
CCCGGCCGCGCCCCGCCGCGGGCCGCAAAAAGGCGCTTTTTGCCGCCAAA417030.2778032578981878No Hit
CCCGGCCGCGCCCCGCCGCGGGCCGCAAAAAGGCGCTTTTCGCCGCCAAA250840.16709629813486185No Hit
CCCGGCCGCGGCCCGCCGCGGGCCGCAAAAAGGCGCTTTTTGCCGCAAAA229510.1528873839297247No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC221220.14736502580686547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)