EGAF00005181045 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005181045
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16746733
Sequences flagged as poor quality	0
Sequence length	150
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCTCAA	12970	0.0	15.98401	7
CTCAAAC	18405	0.0	11.655106	9
GCTCAAA	18970	0.0	11.535546	8
ATGGCTC	19770	0.0	10.813755	5
TGGCTCA	23445	0.0	9.487217	6
TAAACCC	5135	0.0	7.9903593	8
TCTGATG	27475	0.0	7.754268	1
CTCGGGT	5660	0.0	7.4780955	20-24
AAACCCC	5705	0.0	7.3182654	9
GATGGCT	30105	0.0	7.0535464	4
CTGATGG	34805	0.0	6.3495307	2
GGGTGGG	7480	0.0	5.73558	25-29
TTAAACC	8080	0.0	5.5234895	7
CCTCTAG	2405	0.0	5.447218	50-54
TGATGGC	42495	0.0	5.403813	3
GGTCCTC	8530	0.0	5.2994666	45-49
ACACAGC	9170	0.0	5.2438116	10-14