FastQCFastQC Report
Sat 11 May 2024
EGAF00005181068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005181068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17048564
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTGAGAATCTCGTAT2480441.4549260571154263TruSeq Adapter, Index 16 (97% over 37bp)
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC249210.1461765342817143No Hit
ATTGGCTAATACGACTCACTATAGCCGTTTCAGGCTTAATTAAACCATCT190230.11158124520047553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)