FastQCFastQC Report
Sat 11 May 2024
EGAF00005181323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005181323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17810395
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC586200.3291336323534655No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTC389290.21857460207929136No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG189830.10658382366028378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)