FastQCFastQC Report
Sat 11 May 2024
EGAF00005181433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005181433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13593834
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC261590.1924328338863046No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG229240.16863527978935156No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTC183760.1351789348023523No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAGACGGAGTGTAGATCT168190.12372521247500888Illumina Single End Sequencing Primer (100% over 32bp)
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA156560.11516986304231758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)