FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005181462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005181462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13757450
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGTGGT74300.034.594554
AGTGGTA89100.028.8482065
AGCAGTG106150.024.6925832
GCAGTGG112000.023.3359973
GTGGTAT115750.022.4550746
TGGTATC133000.019.4343997
GGTATCA137350.018.7646318
AAGCAGT151000.018.0531521
GTATCAA155700.016.6918419
GCAGAGT87600.06.229592315-19
TCTTGGG94500.05.92707535-39
CAACGCA106850.05.76755210-14
Produced by FastQC (version 0.11.5)