FastQCFastQC Report
Fri 10 May 2024
EGAF00005181670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005181670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12718450
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC561510.4414924774638419No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG291450.22915528228675663No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGCAGAATCTCGTAT185710.14601622053001742TruSeq Adapter, Index 5 (97% over 37bp)
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT140970.11083897802012038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)