FastQCFastQC Report
Sat 11 May 2024
EGAF00005181671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005181671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12718450
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC426240.33513517763563955No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG323510.2543627564679658No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGCGTAGCGTGTAGATCT203130.15971285809198446Illumina Single End PCR Primer 1 (97% over 34bp)
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT170850.13433240685775388No Hit
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA132390.10409287295228585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)