FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005182485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005182485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14704044
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTTAG41000.010.88604455
CCCCTTA41450.010.5995924
TTAGAGC46950.09.6595828
CTTAGAG49550.08.5715977
TAGAGCC54850.08.3994499
CCTTAGA54500.08.3215056
CACACAA68500.06.41391324
GTGCACA58600.06.39036751
GCACACA74000.05.5479353
GCCCCTT87900.05.08032043
TGCCCCT88500.05.04814432
TGCACAC78550.05.04544932
Produced by FastQC (version 0.11.5)