FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005182496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005182496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13704521
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACTATA48350.014.1442739
AACACTA50150.013.2058757
ACACTAT51550.012.4283898
AAACACT80800.08.5528366
CAAACAC82100.07.71598535
GTCTAGT16555.5270604E-56.5244456
TATTTAG77250.06.33671149
GGGGGGG35854.0927262E-105.82714132
CCCTTAT96450.05.52308035
CCTTATT116550.05.18820766
Produced by FastQC (version 0.11.5)