FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005182642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005182642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11640112
Sequences flagged as poor quality0
Sequence length150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGTGGT61750.014.2235464
AGTGGTA65000.013.512315
GCAGTGG71050.012.5656683
GTGGTAT82900.011.375886
TGGTATC95250.09.9008977
AGCAGTG95900.09.7609452
GGTATCA95300.09.7446228
AAGCAGT134600.07.3571611
GTATCAA139750.06.90273489
Produced by FastQC (version 0.11.5)