FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005182739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005182739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15395594
Sequences flagged as poor quality0
Sequence length150
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAAAC95750.012.5548619
CCTCTAG7500.012.47942350-54
ATGGCTC93000.012.1521685
TCTAGGA6500.011.29793950-54
TCTGATG100900.011.2446731
TGGCTCA102250.011.1232286
CTCTAGG6400.010.34952150-54
CTAGGAT7250.09.73196450-54
GATGGCT120050.09.473974
GGCTCAA127500.08.9203357
GCTCAAA145950.08.0886128
CTGATGG200850.05.69941232
CTAGCAC4455.3993304E-45.17728950-54
Produced by FastQC (version 0.11.5)