FastQCFastQC Report
Sat 11 May 2024
EGAF00005183095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005183095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17585177
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCTAACTCGTGTAGATCT374900.21319091641784443Illumina Single End Sequencing Primer (100% over 32bp)
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC193670.11013252809454237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)