FastQCFastQC Report
Sat 11 May 2024
EGAF00005183143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005183143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13659712
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCATAGCCGGTGTAGATCT1283200.9394048717864623Illumina Single End Sequencing Primer (100% over 32bp)
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC519080.3800080118819489No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTC371880.27224585701367643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)