FastQCFastQC Report
Sat 11 May 2024
EGAF00005183553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005183553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18488235
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGCGTAGCGTGTAGATCT233270.12617213054680448Illumina Single End PCR Primer 1 (97% over 34bp)
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG228540.1236137467962734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)